PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001536-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 463aa    MW: 51859.5 Da    PI: 7.8849
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001536-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.52e-27125227291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 
                            fY+eYA++vGF++ +++s++sk+++e+++++f Cs++g+++e +k+             +e++  +ra  +t+Cka+++vk+++dgkw
  SMil_00001536-RA_Salv 125 FYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprsrqgsnqdAENATGRRACAKTDCKASMHVKRRSDGKW 212
                            9*****************************************999999***999988776677779********************** PP

                   FAR1  77 evtkleleHnHelap 91 
                             ++++e+eHnHel p
  SMil_00001536-RA_Salv 213 IIHRFEKEHNHELLP 227
                            ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-25125227IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MRLFVLTFVM LYASAHDRIM NVVVATQHLI AGQRVVVMDI DLRLPSGEHD KELEEPNGIV  60
NMLDGEEKPL NVDGVGESMG DEDKLHVEDG DDVNSPLPDI DFKDVTILEP LPGMEFGSHG  120
DAYAFYQEYA RSVGFNTAIQ NSRRSKTSRE FIDAKFACSR YGTKREYEKS LNRPRSRQGS  180
NQDAENATGR RACAKTDCKA SMHVKRRSDG KWIIHRFEKE HNHELLPAQA SVLNMTPEAN  240
SKKAGIWQWM QFLCRHAMIV LQICGISTIP LQYILKRWTK DAKSRYSIEG SEQVQSRLQR  300
LSLRALGDAF ENCLNANYSN KNLLEAGPSA SPGILCIEDD IQSGSLSKTN KKKNATKKRK  360
EKLSSRPVNL DGFFGHHQSA PGMVQLNLMG PTRDSYFGNQ PAIQGLGQLN SIAPTHDGYY  420
GSQPAMPGMG HMEFFRTPNF GYGIRDDPNV RSAQLHDDAT RHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100396.11e-123PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
SwissprotQ9LIE54e-70FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A022RQR51e-113A0A022RQR5_ERYGU; Uncharacterized protein
TrEMBLA0A022RST61e-113A0A022RST6_ERYGU; Uncharacterized protein
STRINGSolyc07g043270.2.16e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-71far-red elongated hypocotyls 3